error message when load limix in R

[pmbio]

error message when load limix in R

[flophys]

fixed, thanks Alex!

[skiaphrene]

Hi xiandzhou,

I found that this issue was due to a file path problem in the configLimix() function. I worked around by using this configLimix2() function instead of configLimix():

configLimix2 <- function (limix_path) {
  python.assign("limix_path", limix_path)
  python.exec("sys.path.append(limix_path)")
  python.load(system.file("pysrc", "init_data.py", package = "scLVM"))
  # in the original configLimix it says "py" instead of "pysrc"
}

Hope this helps,

-- Alex