Comments (4)
FarmGeek4Life
commented on June 24, 2024
1
What version of MSPathFinder are you running? How many spectra are in the input file? Release 1.0 (if I remember correctly) reports "proteins", but what was really being counted was peptides.
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alchemistmatt
commented on June 24, 2024
1
Please use the latest release since it has numerous bug fixes compared to the preview release that you are currently using. See:
https://github.com/PNNL-Comp-Mass-Spec/Informed-Proteomics/releases/tag/v1.0.6619
from informed-proteomics.
sunyusui
commented on June 24, 2024
The input file contains 3460 spectra, and the version I am using is 1.0.6510.1956
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sunyusui
commented on June 24, 2024
I am very grateful to the scholars for their help, I will download the latest version to complete my experiment.
from informed-proteomics.
Related Issues (20)
- How to install? HOT 2
- Error computing FDR: Cannot compute FDR Scores; target file is empty HOT 1
- What does this warning mean? HOT 5
- Why does the identified PrSM decrease a lot after using the modified file? HOT 1
- Why is there no data in the generated 2DLC_H3_1.ms1ft file?
- Can ProMex be used to extract feature from bottom up data HOT 1
- Why is there no data in the generated RP4H_P32_WHIM2_biorep1_techrep3.ms1ft when RP4H_P32_WHIM2_biorep1_techrep3.ms1ft runs ProMex?
- Reported proteoform masses is always 9Da less HOT 2
- Is there any way to batch export XIC data points(time & Intensity) of all PrSMs? HOT 2
- ProMex feature determination: Mass HOT 2
- Is MSPathFinderT able to report isobaric proteoforms? HOT 3
- Issues in searching Thermo EThcD raw data
- limiting search by mass, charge and seqence length HOT 1
- Promex csv error
- Output deconvoluted spectra for external visualization/analysis
- General help
- Analysis of profile data MSPathFinder HOT 4
- FDR filtering HOT 2
- Sequence contains no elements HOT 1
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