poisotlab/lpbrim

LP & BRIM bipartite modularity detection in R

lpbrim's Issues

Weighted bipartite modularity

note to self -- do it

Error in colSums(x) : 'x' must be an array of at least two dimensions

Hi Prof. Poisot

I got this error when I used "findModules". I input an adjacency matrix with same number of rows and columns, which was transformed from a plant-pollinator bipartite matrix. I tried your example in "findModules" but found the same error. Is it an intrinsic problem or what?

Sincerely,
Hanlun

Reordering matrix in bLP

Is it necessary to reorder the adjacency matrix like in the third line of the function bLP (i.e., x <- x[sample(c(1:NROW(x))),sample(c(1:NCOL(x)))]) or at all?

I already get classic cannot allocate vector of size errors at that stage with large-ish datasets.