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Explore and interpret large embeddings in your browser with interactive visualization! 📍

Home Page: https://poloclub.github.io/wizmap/

License: MIT License

JavaScript 0.55% Svelte 9.77% SCSS 16.78% HTML 0.12% CSS 3.74% TypeScript 58.62% GLSL 0.64% Python 9.77%

embeddings interactive-visualizations machine-learning visualization webgl

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Embeddings not showing

When I load the embeddings provided in the demo, it shows empty no matter what I do.

Local package build: wizmap.js not found

I am trying to add an option for customized stopwords (#6), but struggling to install a local version of the Python widget.

Here is how I try (after changing wizmap.py):

$ python -m pip install -U -e ../wizmap/notebook-widget
[...]
Successfully built wizmap
Installing collected packages: wizmap
  Attempting uninstall: wizmap
    Found existing installation: wizmap 0.1.2
    Uninstalling wizmap-0.1.2:
      Successfully uninstalled wizmap-0.1.2
Successfully installed wizmap-0.1.2

However, when I try to import wizmap in Python, I get this error:

import wizmap

wizmap.visualize(data_url, grid_url)

File [.../wizmap/notebook-widget/wizmap/wizmap.py:847](.../wizmap/notebook-widget/wizmap/wizmap.py:847), in visualize(data_url, grid_url, height)
    834 def visualize(data_url, grid_url, height=700):
    835     """
    836     Render WizMap in the output cell.
    837 
   (...)
    845         HTML code with deferred JS code in base64 format
    846     """
--> 847     html_str = _make_html(data_url, grid_url)
    849     # Randomly generate an ID for the iframe to avoid collision
    850     iframe_id = "wizmap-iframe-" + str(int(random.random() * 1e8))

File [.../wizmap/notebook-widget/wizmap/wizmap.py:797](.../wizmap/notebook-widget/wizmap/wizmap.py:797), in _make_html(data_url, grid_url)
    794 html_bottom = """</head><body><div id="app"></div></body></html>"""
    796 # Read the bundled JS file
--> 797 js_b = pkgutil.get_data(__name__, "wizmap.js")
    799 # Read local JS file (for development only)
    800 # with open("./wizmap.js", "r") as fp:
    801 #     js_string = fp.read()
    802 # js_b = bytes(js_string, encoding="utf-8")
    803 
    804 # Encode the JS & CSS with base 64
    805 js_base64 = base64.b64encode(js_b).decode("utf-8")

File [/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/pkgutil.py:640](https://file+.vscode-resource.vscode-cdn.net/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/pkgutil.py:640), in get_data(package, resource)
    638 parts.insert(0, os.path.dirname(mod.__file__))
    639 resource_name = os.path.join(*parts)
--> 640 return loader.get_data(resource_name)

File :1130, in get_data(self, path)

FileNotFoundError: [Errno 2] No such file or directory: '.../wizmap/notebook-widget/wizmap/wizmap.js'

Note: I have replaced the full path to my local wizmap repository by ... in the output above for brevity.

This works fine with the wizmap version 0.1.2 installed with pip install wizmap.
Is there anything else I need to run for building the Python package locally?

please check the link, why the blue contour cover all the point?

https://poloclub.github.io/wizmap/?dataURL=https%3A%2F%2Fhuggingface.co%2Fdatasets%2Fbobdingli%2FTESTWIZMAP%2Fresolve%2Fmain%2Fdata.ndjson&gridURL=https%3A%2F%2Fhuggingface.co%2Fdatasets%2Fbobdingli%2FTESTWIZMAP%2Fresolve%2Fmain%2Fgrid.json

point can switch "true" and "gene" points respectively
however, the blue contour cover all the points region

What should be used to start local services in order to pass data into wizmap.

High density region labels are calculated only for one of the two groups

High density region labels are calculated only for one of the two groups:

Different colors for different points?

Hello!

Is there an opportunity to mark different points with different colors?

Cannot use spaces in `groupNames`

For future fixing 🙂

Workaround: remove spaces from group string names on Python side when generating Wizmap files.

I have a small request: could you please give an example of accessing files via localhost-URLs? I have a notebook running on localhost:8888, from within the "wizmap" folder. I have tried to use the following URLs for my data:

http://localhost:8888/view/example/smaller_data.ndjson
file:///Users/alexsend57/Documents/wizmap/example/smaller_data.ndjson

However, in both cases the visualisation does not work (points are not appearing). I have checked that there is no problem with the data itself by uploading it on GitHub and running the visualisation with public URLs -- it worked perfectly.

No points are displayed

I am running locally WizMap but only contours are visible, see below showing the DiffusionDB example. I am running WizMap in the command line:

❯ npm run dev


> [email protected] dev
> vite --port 3000


  VITE v3.2.7  ready in 182 ms

  ➜  Local:   http://localhost:3000/
  ➜  Network: use --host to expose
10:50:36 AM [vite-plugin-svelte] /src/components/mapview/MapView.svelte:70:0 Unused CSS selector ".main-app-container.hidden"
10:50:36 AM [vite-plugin-svelte] /src/components/footer/Footer.svelte:250:0 Unused CSS selector "dialog[open] .row-block .row-name"

Where to find wizmap.js?

Hello! Thank you for a useful tool!

I have a problem while running the example notebook "imdb.ipynb". When I run the last cell with "wizmap.visualize", I receive this error:

FileNotFoundError: [Errno 2] No such file or directory: '../notebook-widget/wizmap/wizmap.js'

Indeed, there is no such file. What actions should I perform in order to obtain it?

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