ppericard/minia

Minia is a short-read assembler based on a de Bruijn graph

Minia

Linux	Mac OSX

What is Minia ?

Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of contigs. Minia produces results of similar contiguity and accuracy to other de Bruijn assemblers (e.g. Velvet).

Getting the latest source code

Requirements

CMake 2.6+; see http://www.cmake.org/cmake/resources/software.html

C++11 compiler; (g++ version>=4.7 (Linux), clang version>=4.3 (Mac OSX))

Instructions

# get a local copy of minia source code
git clone --recursive https://github.com/GATB/minia.git

# compile the code an run a simple test on your computer
cd minia
sh INSTALL

User manual

Type minia without any arguments for usage instructions.

A more complete manual:

cd doc 
pdflatex manual.tex

If you cannot compile it: http://minia.genouest.org/files/minia.pdf

#Contact

To contact a developer, request help, etc: https://gatb.inria.fr/contact/