pratikchandrani/clinome

Clinical genOme (ClinOme) analysis tool to analyze raw NGS dataset and infer tissue-agnostic therapeutic relevance of variants.

Hey! I'm Pratik. Welcome to my GitHub profile!

           

Background

Ph.D. in Computational Biology (Cancer Genomics, Functional Genomics, & Bioinformatics) from ACTREC-Tata Memorial Centre, Navi Mumbai.

Main academic interest: Computational Biology, Bioinformatics, Artificial Intelligence, Fundamental Biology

Please find more details here: pratikchandrani.github.io

Research Experience

Genome Sequencing :- Whole Genome Sequencing (WGS) or Targeted Sequencing (whole exome, small panel) based Somatic & Germline Variant Identification, Copy Number Variations, Clonality, and more!

Transcriptome Sequencing :- Gene expression profiling, biological pathways, differential expression, RNAseq variants, gene fusion, small RNA, non-coding RNA, and more!

Human Pathogen Sequencing :- Pathogen Sequencing, Identification, Microbial Community, and more!

Functional Genomics :- SNParray, Pre-Clinical Characterization, RNAi, CRISPR screens, and more!

Structural Bioinformatics :- Mutant Structure Modelling, Molecular Dynamics, Small Molecule Docking, and more!

Population Genomics :- Comparative Genomics, Synteny Analysis, Hardy-Weinberg Equilibrium (HWE), and more!

Wet-lab Science :- Mammalian Cell Culture, Laboratory Animal Experimentation, and more!

Programming Languages

       

Badge Sources: Awesome Badges - https://github.com/Envoy-VC/awesome-badges and custom badges constructed using https://shields.io/

Profile Page Template: Daren Card - https://github.com/darencard