Giter Site home page Giter Site logo

youandme's Introduction

youandme

An unofficial Ruby library and command-line application ("youandme") for quickly parsing 23andme raw data files into a plain Ruby structures for quick processing and analysis.

Installation

gem install youandme

Command-Line Usage

The primary command-line script is "youandme", which generates a simple side-by-side comparison report for two given 23andme raw data files. To generate the reports, grab a few raw 23andme data files (from 23andme.com, SNPedia etc.), and compare them like so:

youandme --directory <output_directory> --left <23andme_data_file.txt> --right <23andme_data_file.txt>

After the script completes, four plain-text files will be placed in the specified directory in the following formats:

  • report.md MultiMarkdown version of the report.
  • report.ltx LaTeX version of the report.
  • report.html HTML version of the report.
  • report.css Stylesheet for the HTML file.

For "full" files, this will take a LONG time to run. (As in, probably more than 24 hours.) I recommend breaking down the data files into chromosome-size chunks, and running each comparison through this script individually.

Authors

Preston Lee

Copyright

Copyright (c) 2011 Preston Lee. See LICENSE.txt for further details.

youandme's People

Contributors

preston avatar tonifarley avatar

Stargazers

Jacob Powers avatar Angus H. avatar Mike Schwab avatar swein avatar Chris Korhonen avatar avatar Justin Grimes avatar avatar Martin Sorich avatar Suvi-Tuuli Allan avatar avatar naveen avatar

Watchers

avatar avatar

Forkers

wisepsych

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.