To run: sh Extract_NBS-LRR.sh Use shell script to extract fastq reads that hit a specific reference sequence in fasta format i.e. select a subset of fastq reads. Designed initially for use with NBS-LRR reference sequences. Implements 2 perl scripts automatically. Designed for Hiseq reads specifically.
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View Code? Open in Web Editor NEWExtract fastq reads that hit NBS-LRR reference sequences i.e. select a subset of fastq reads