Comments (2)
Hi!
Thanks for bringing this up, Greg.
Dear @jairideout, please let me know if there is anything I can help you with.
The pipeline has some R dependencies. As far as I can remember from our earlier conversations with Greg, I anticipate that it is not very ideal for QIIME VM. Regardless, the installation instructions are here, and I would be more than happy to answer any questions along the way:
from qiime-deploy-conf.
We're not going to be able to get to this for 1.9.0 as we have a lot of other issues that are higher priority still that we need to wrap up. It should be easy enough for users how want access to this to install in the Linux VMs themselves.
from qiime-deploy-conf.
Related Issues (20)
- 1.8 conf refers to pplacer alpha14 but downloaded version is alpha15
- SQLAlchemy link is dead HOT 1
- R install should enable shared libraries HOT 1
- remove pplacer and parsinsert
- ViennaRNA link has moved HOT 1
- Add HDF5 libraries for the QIIME installation HOT 1
- Wrong installation link HOT 1
- 1.7 and 1.8 configuration files have links to the beast HOT 1
- infernal path is incorrect HOT 1
- need 12_10 version of greengenes in 1.5.0-dev HOT 3
- install mafft in VirtualBox
- ability to set paths when deploying auto-deploy script HOT 1
- Update QIIME conf file to not pull qiime_test_data
- should we have a qiime-dependencies.conf? HOT 10
- add PATH=$SGE_ROOT/bin/linux-x64:$PATH to env for ipython HOT 1
- upgrade R version to 3.0.1 in QIIME config
- v1.8.0 [R] package failure HOT 7
- Remove gtools and klar HOT 1
- should we merge the qiime-deploy-conf repo with the qiime-deploy repo? HOT 3
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from qiime-deploy-conf.