transformPhenotype
A shiny app to normalize continuous traits in GWAS
The app relies on some external libraries that you can install beforehand. Simply run the following code:
neededLibraries <- c(
"shiny"
,"shinydashboard"
,"shinythemes"
,"DT"
,"magrittr"
,"nortest"
,"forecast"
,"fBasics"
)
sapply(neededLibraries , function(x) if(!x %in% installed.packages()[,1]) install.packages(x))
To run it locally, you can install the shiny package in R, and
use the function runGithub()
if (!require('shiny')) install.packages("shiny")
shiny::runGitHub("transformPhenotype", "gmelloni" , ref="production")
Original code by Angela Matchan, improved by Arthur Gilly, Loz Southam, Rachel Moore and Vincent Appel. Master branch is compatible with original script. Future versions will probably walk astray.