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3dcell_tracking_dsaa2019

This repository contains the codes for the paper we submitted to IEEE DSAA 2019 : "Lightweight and Scalable Particle Tracking and Motion Clustering of 3D Cell Trajectories"

academic-honesty

Website for the Academic Honesty podcast.

acm-se-cilia-short-paper

addf_pomdp

Toy implementation of the POMDP framework defined in the ADDF grant and technical report.

bsec-2015

Conference materials for BSEC 2015.

cilia-metrics

Scripts for computing metrics from ciliary motion.

ciliarepresentation

A modular generative pipeline for understanding cilia appearance and dynamics

ciliaweb-dashboard

Dashboard for the CiliaWeb representation learning module.

deep-representations-clustering

This repository is an attempt to replicate the results for the paper: "Learning Deep Representations for Graph Clustering".

dlmia17

MICCAI conference

dockerfiles

Odd collections of Docker files.

dr1dl-dask

Dictionary Learning in Dask

dr1dl-pyspark

Dictionary Learning in PySpark

draenor-bahaa

dsaa

Paper For Review

fergus-ssl

Python implementation of the Rob Fergus semi-supervised learning algorithm.

flink-r1dl

R1DL in Flink using Java. Sister project of quinngroup/pyflink-r1dl

gcneuro

generative-models

Generative Models

ji-2016-mrs2578

Neutrophil motion tracking using optical flow.

jupyterday2018-cilia-segmentation

Presentation materials for my talk on cilia segmentation for Jupyter Day ATL.

kubernetes

littlejohn

Docker setup and documentation for building the images used on the LittleJohn UGA cluster.

lstm-scipy2018

mahout

Mirror of Apache Mahout

neutrophil-isbi2018

ISBI Conference Paper

neutrophils

nystrom

open-science-2018

Materials for Open Science guest lecture with Dr. Nicole Lazar.

openscience-intro-march2019

Introduction to Open Science guest lectures for Dr. Suzanne Barbour.