ragyhaddad Goto Github PK

aerpod-project

I wrote a python native Kubernetes workflow orchestrator

automated-testing-analysis

Workflow for analyzing STDF data including a finalized model to reduce the number of continuity tests. All analysis made in R and Python - This was my intro to R at a summer internship at Spectra7

bloom-2.0

Bloom is a web application build in Vanilla JavaScript and D3.js that allows for an intuitive and interactive music discovery experience.

bloom-clientside

bloommusic.us. A web application built in vanilla javascript and D3.js, renders D3.js animations dynamically and a fun way to find new music

burlap_examples

Tutorial and example code for BURLAP (http://burlap.cs.brown.edu)

d3-serverside-node.js

This is a skeleton code for rendering D3.js on a node.js server and sending back an http response carrying your SVG.

data-visualization

Data Visualization portfolio and coursework for CS 7450

discogs2pg

Discogs to PostgreSQL importer

dnascan

DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.

dvaserver

Coursework project: A web application for clustering and visualizing gene expression.

flower

Flower - A Friendly Federated Learning Framework

infoviz-api

infoviz-project

javascript-d3-portfolio

Some of my full-stack projects that were fun to make!

machine-learning

machine learning coursework projects

molutils

I wrote some RDKIT wrappers to make my life easier in my previous job. I did the same at Cellarity but on a much more mature level

protvec

Amino acid embedding implementation of Protvec paper because I wanted to use the representation in downstream models

smiles-lstm-autoencoder

Smiles Seq2Seq Model for molecular diversification using latent vector interpolation

synthetic-dtis

Generation of synthetic drug target interactions for interaction data augmentation

using-deep-learning-to-annotate-the-protein-universe

"Using Deep Learning to Annotate the Protein Universe" in Pytorch - I was fascinated that we can do alignment free annotations of PFAM domains with a simple convolution network and learn and embedding thats similar to BLOSUM