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A logical, reasonably standardized, but flexible project structure for doing and sharing data science work. Forked from http://drivendata.github.io/cookiecutter-data-science/

License: MIT License

Python 52.85% Makefile 10.05% Batchfile 9.14% Groovy 14.57% Shell 4.10% Dockerfile 7.28% Jupyter Notebook 2.01%

cookiecutter-data-science's Introduction

Cookiecutter Data Science

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

Requirements to use the cookiecutter template:


  • Python 2.7 or 3.5
  • Cookiecutter Python package >= 1.4.0: This can be installed with pip by or conda depending on how you manage your Python packages:
$ pip install cookiecutter

or

$ conda config --add channels conda-forge
$ conda install cookiecutter

To start a new project, run:


cookiecutter https://github.com/indigo-dc/cookiecutter-data-science

The resulting directories


Once you answer all the questions, two directories will be created:

  • DEEP-OC-<your_project>
  • <your_project>

each directory is a git repository and has two branches: master and test.

The directory structure of <your_project> looks like this:


├── LICENSE
├── README.md              <- The top-level README for developers using this project.
├── data
│   └── raw                <- The original, immutable data dump.
│
├── docs                   <- A default Sphinx project; see sphinx-doc.org for details
│
├── models                 <- Trained and serialized models, model predictions, or model summaries
│
├── notebooks              <- Jupyter notebooks. Naming convention is a number (for ordering),
│                             the creator's initials (if many user development), 
│                             and a short `_` delimited description, e.g.
│                             `1.0-jqp-initial_data_exploration.ipynb`.
│
├── references             <- Data dictionaries, manuals, and all other explanatory materials.
│
├── reports                <- Generated analysis as HTML, PDF, LaTeX, etc.
│   └── figures            <- Generated graphics and figures to be used in reporting
│
├── requirements.txt       <- The requirements file for reproducing the analysis environment, e.g.
│                             generated with `pip freeze > requirements.txt`
├── test-requirements.txt  <- The requirements file for the test environment
│
├── setup.py               <- makes project pip installable (pip install -e .) so {{cookiecutter.repo_name}} can be imported
├── {{cookiecutter.repo_name}}    <- Source code for use in this project.
│   ├── __init__.py        <- Makes {{cookiecutter.repo_name}} a Python module
│   │
│   ├── dataset            <- Scripts to download or generate data
│   │   └── make_dataset.py
│   │
│   ├── features           <- Scripts to turn raw data into features for modeling
│   │   └── build_features.py
│   │
│   ├── models             <- Scripts to train models and make predictions
│   │   └── deep_api.py    <- Main script for the integration with DEEP API
│   │
│   ├── tests              <- Scripts to perfrom code testing
│   │
│   └── visualization      <- Scripts to create exploratory and results oriented visualizations
│       └── visualize.py
│
└── tox.ini                <- tox file with settings for running tox; see tox.testrun.org

The directory structure of DEEP-OC-<your_project> looks like this:


├─ Dockerfile             Describes main steps on integrationg DEEPaaS API and
│                         <your_project> application in one Docker image
│
├─ Jenkinsfile            Describes basic Jenkins CI/CD pipeline
│
├─ LICENSE                License file
│
├─ README.md              README for developers and users.
│
├─ docker-compose.yml     Allows running the application with various configurations via docker-compose
│
├─ metadata.json          Defines information propagated to the [DEEP Open Catalog](https://marketplace.deep-hybrid-datacloud.eu)

Documentation


More extended documentation can be found here

Installing development requirements


pip install -r requirements.txt

Running the tests


py.test tests

cookiecutter-data-science's People

Contributors

adamkgoldfarb avatar apollonin avatar codyrioux avatar dmitrypolo avatar drivendata avatar firasrb avatar hwartig avatar ikuo-suyama avatar isms avatar jbrambledc avatar johnpaton avatar keldlundgaard avatar kplauritzen avatar liudonghs avatar lorey avatar midnighter avatar mkcor avatar niloch avatar ohenrik avatar orviz avatar pjbull avatar proinsias avatar randallrs avatar verginer avatar vykozlov avatar

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