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1000vcfs

2vcf

convert 23andme or Ancestry.com raw genotype calls into VCF format, with dbSNP annotations

5utr

Annotation resource/tool for 5'UTR variants

a3c_trading

Trading with recurrent actor-critic reinforcement learning

adam

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

adjutant

Runs a pubmed query, returns results and allows user to explore high-level structure of returned documents

afraid-to-commit

Don't be afraid to commit - a workshop/tutorial for inexperienced Python/Django developers who would like to contribute more to the projects they use.

afterqc

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

aiqc

End-to-end deep learning on your desktop or server.

airflow

Apache Airflow

alpaca

ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algebraic approach to incorporate sample based filtering into the calling. This allows to intuitively control the FDR for arbitrary filtering scenarios.

altair_examples

Juptyer Notebooks with Altair Examples

amazon-genomics-cli

ampy

an-introduction-to-applied-bioinformatics

Interactive lessons in bioinformatics.

analysis_pipeline

TOPMed analysis pipeline

ancestry

program to estimate admixture coefficients from individual genotype or sequence data

ancestry_hmm

ancestry_pipeline

Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc

ancient

Ancestry inference with convolutional neural networks

android

Examples of Android applications

android-bootstrap

A template/bootstrap/boilerplate application that includes tons of great open source tools and frameworks.

ansible-galaxy

An Ansible role for managing a Galaxy (http://galaxyproject.org) server.

app

DemocracyOS is an online space for deliberation and voting on political proposals. The software aims to stimulate better arguments and come to better rulings.

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2018

ark-invest-tesla-valuation-model

An excerpt from our financial valuation model of Tesla

arvados

An open source platform for managing and analyzing biomedical big data

askbot-devel

ASKBOT is a StackOverflow-like Q&A forum, based on CNPROG.

askbot_reusable

Askbot integrated with Django 1.5 to be used as reusable Django application

atropos

An NGS read trimming tool that is specific, sensitive, and speedy. (production)