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ismb-2018

VAT tutorial for ISMB 2018

iva

Generic Interactive Variant Analysis browser

jgalaxy

A Java/Swing front-end to Galaxy (http://galaxyproject.org).

john-carmack-plan-archive

Collection of John Carmack’s .plan files.

judi

This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many parameter settings. Bioinformatics pipeline: Just Do It!

jupyter-wysiwyg

A WYSIWYG markdown/HTML editor for Jupyter Notebook

jupyterhub-django

Makes use of Django allauth to launch jupyterhub from django authentication system. Here django is service provider and Jupyterhub is client application. OAuth or open authentication is used. Two servers are used. One is the python server to launch django and another one for JupyterHub. To launch jupyterhub, shell script is executed on windows using wsl. Both the servers run simultaneously.y

jupyterlab

JupyterLab computational environment. This is a very early preview, and is not suitable for general usage yet.

jvarkit

Java utilities for NGS

kalign

A fast multiple sequence alignment program.

kaniko

Build Container Images In Kubernetes

karellen-kombu-ext

Karellen Kombu Extensions (restored Kombu ORM)

karyoploter

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

kentutils

UCSC command line bioinformatic utilities

keras

Deep Learning library for Python. Runs on TensorFlow, Theano, or CNTK.

kescases

Test code for Kestrel

kestrel

Mapping-free variant caller for short-read Illumina data

kinetick

Framework for creating and running trading strategies. Blatantly stolen copy of qtpylib to make it work for Indian markets.

kivy-installer

Scripts and tools for easily installing Kivy

klib

A standalone and lightweight C library

koalas

Koalas: pandas API on Apache Spark

kogoworkshop

kubernetes

Production-Grade Container Scheduling and Management

lab

Lab wraps Git or Hub, making it simple to clone, fork, and interact with repositories on GitLab

lancet

Microassembly based somatic variant caller for NGS data

latex-to-html5

Scripts for Latex to HTML5 conversion

ldpred-funct

Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337

learning-resource-links

An awesome list of learning resources for bioinformatics, genomics and computational biology

lfs-buildout-development

zc.buildout receipt to create a development environment for LFS

lfs-theme-bootstrap

Theme for LFS - Lightning Fast Shop - based on Twitter's open source Bootstrap framework.