rare-technology/eco_dashboard

Ecological surveys dashboard

eco_dashboard's Issues

add seagrass data

and seagrass tab

Add rare theme

Blank fish family

Some samples in fish.survey have a blank "" value for family. When using that as an option to plot, it crashes the app. There are about 600 samples with this nameless family. For now, they are filtered out by passing rv$data_full through a filter.

Remove grid lines from plots

Update data

Fish metrics appear when benthic data source is selected

Update the map when filtering by fish family

Currently the map will only update when selecting MA area

HND site has incorrect latitude

HND site with location_name of Gmc3 has a negative latitude. This noticeably separates it from the other HND sites on the map. If the value were positive, it would fit right into the cluster of HND sites.

Redesign "plot type" selection

"Bar plots" vs "Distribution plots" doesn't sound very clear what the difference is until you click it. Even then, "distribution plot" just doesn't sound right, except maybe for the fish size and seagrass height plots. But still the point of that selection is to show samples or not. So probably change the text to "Show samples" and a toggle switch w/ no text.

Implement distribution plots (aka range plots)

Metric selection defaults to biomass

To reproduce:

1. Select any MA
2. Select density metric under display tab
3. Switch back to geo tab, select another MA
4. Switch back to display tab

Consider reactivity between year and geo selections

Currently year and geo selections (except country) are isolated from each other. So, a certain year may be picked and the choices will include communities with no records in that year. Maybe use selected communities to update year choices instead of country.

add benthic data

and new benthic tab

"Warning: Error in aggregate.data.frame: no rows to aggregate" briefly appears

To reproduce:

1. Select IDN, any MA's.
2. Deselect all fish family, select any or a few.
3. Select MOZ
4. Select Ilha de Mocambique as MA (cannot reproduce if other MA is chosen)

The plot will update with a brief pause and in the console the error from the title can be seen. From recent experience, that seems to indicate that in mod_plot.R, plot_biomass() is having an empty data_filtered passed through it.

Functionally, it looks ok. Double check that the plots coming out are correct though.

deploy !

f0ae984 is complete enough to deploy to a dev server to check with Courtney and George

Enable switching yaxis between fixed and free

Add overflow scroll to plots

Plots that plot individual MA's will cut off if enough MA's are selected

size_class vs length

Do we want to continue using size_class as the plotting variable for fish length? If so, what should the standard size classes be? The size classes are inconsistent throughout the fish surveys dataset.

Otherwise we could just use the raw length values.

Show fish density on plots and map

Production Optimizations

Although the ECO dashboard currently uses up less RAM than the HHS and FMA dashboards, it has twice the CPU and network usage. This may be due to the instant plot updates as the user changes geography and display settings. Some considerations:

1. A "generate plot" button so that the plotting code runs only when the button is clicked after the user is happy with the settings.
2. Caching plot images (RAM seems to not be an issue so why not?)
3. (hard) Code optimization. Ideally should not need this.

Rename "Fish biomass density trends" to "Fish biomass"

revamp map tab

No more pop-up box when clicking on sites. Instead highlight regions to denote:

• MA
• coreal reef area
• habitat area

Will have to figure out how to work with shape files, we have them somewhere.

Verify location status for IDN fish data

Some sites like Mataoleo and Teluk Lasolo have no 'Reserve' data. This is either a coding error or due to something about how no reserves were surveyed in those areas. according to Stu. If the latter is true, then there shouldn't be anything to fix.

Show fish size on plots and map

add BRA invertebrate data

and new invertebrate tab

Fix Mozambique fish data geo info

There's only two MAA's but the SNU and LGU info is missing

Rename "Benthic" to "Coral Reef"

Rename "Fish number density trend" to "Fish density"

hide plots for MA's with only one site

Coral data

• Revamp to include trends. Consider interactivity
• When Courtney finishes the CoralNet-Mermaid mapping, redefine coral variables according to the mapping

Show fish diveristy on plots and map

add historical PHL fish data