Name: PHE3ID Public Health, Epidemiology & Evolutionary Ecology of Infectious Diseases
Type: Organization
Bio: We research ecology and evolution of pathogens, especially multidrug-resistant bacteria
Location: CIRI U1111, University of Lyon, France
PHE3ID Public Health, Epidemiology & Evolutionary Ecology of Infectious Diseases's Projects
Common PHE3ID bash commands for bacterial molecular epidemiology
Impact of non-pharmaceutical interventions on the spread of the Covid-19 pandemic
Detect change of fuzzy event rate
Accompanying code for Shapiro et al. 2019
Common QoL utilities
Analysis code for Gillet et al. 2020
Description
Time-scaled haplotypic density (THD) implementation for R. Estimates epidemic success from pathogen genetic data.
Accompanying code for Merker at al 2022.