rdshankar/rimmport

RImmPort: Enabling ready-for-analysis immunology research data

rimmport's Issues

Getting An Expression Array

Ravi,

I am attempting to get the microarray data from a study SDY269. I am using RImmport, and I really like it so far. I thought it would be under Assay Type: Array.

> getListOfAssayTypes()
[1] "ELISA"         "ELISPOT"       "Array"         "PCR"           "HLA Typing"    "MBAA"         
[7] "HAI"           "Neut Ab Titer" "Flow"         

sqlite_conn <- dbConnect(SQLite(), dbname=file.path(db_dir, "ImmPort.sqlite"))
setImmPortDataSource(sqlite_conn)
sdy269.array <- getAssayDataOfStudies("SDY269", "Array")

I get a list of two data frames, neither looks like a microarray.

Thanks in advance,

Bill