recetox Goto Github PK

aplcms

fork of https://github.com/tianwei-yu/apLCMS

callc

chem_identifier_converter

ei_spectra_predictions

This repository contains the workflow and supporting information for "Quantum chemistry based prediction of electron ionization mass spectra for environmental chemicals".

galaxy

Data intensive science for everyone.

galaxytools

Set of Galaxy tool wrappers developed at RECETOX

gc-meox-tms

mfassignr

The MFAssignR package was designed for multi-element molecular formula (MF) assignment of ultrahigh resolution mass spectrometry measurements. A number of tools for internal mass recalibration, MF assignment, signal-to-noise evaluation, and unambiguous formula selections are provided.

msmetaenhancer

Tool for mass spectra metadata annotation.

mspannotator

Repository for tool that add more annotations (e.g. SMILES, InChI) to chemical identifiers based on CAS number.

python-template

Netherlands eScience Center Python Template

qceims

qcxms-dockerfile

raims

Recetox AI MS aproaches

ramclustr

Assigning precursor-product ion relationships in indiscriminant MS/MS data

rcx-tk

recedb

recetox-aplcms

This is a custom fork of apLCMS containing adaptations for large scale studies.

recetox-msfinder

recetox-xmsannotator

This is a custom adaptation of the original version of xMSannotator. It is a complete rewrite of the original functionality, following the same program structure.

retip

Retip - Retention Time prediction for metabolomics

riassigner

RIAssigner is a python tool for retention index (RI) computation for GC-MS data.

tool-installer

training-material

A collection of Galaxy-related training material

waveica

Removal of batch effects for large-scale untargeted metabolomics data based on wavelet transform.

waveica_2.0

Removing batch effects for untargeted metabolomics data without using batch information

workflow-reports

workflow-test-data

workflow-testing

Contains RECETOX workflows with automated tests against our instance at https://umsa.cerit-sc.cz/

xmsanalyzer