reimandlab/rm2

Regression Models for Localised Mutations

rm2's Issues

I got error messages like this:Error in RM2(maf = muts, sites = enhancer, window_size = window_size) : Error in .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges") : solving row 2440: negative widths are not allowed

Error message

Dear Reimand:
After we add the final 16834 line: chr3 12146056 12147096 (previous 16833 lines did not report an error), we got a strange message as following:
Error in RM2(maf = muts, sites = ctcf_chr3_4, window_size = window_size) : Error in .width_as_unnamed_integer(width, msg = "an end that is greater or equal to its start minus one") : each range must have an end that is greater or equal to its start minus one

Thank you very much for your attention and consideration.

chr | start | end
1 chr1 | 843081 | 843977
...
16833 chr3 | 12138282 | 12139593
16834 chr3 | 12146056 | 12147096**