resurgo-genetics Goto Github PK

r-intro

Cambridge Basic R Course

racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116

rambutan

Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.

rapid

RAPID is a set of tools for the alignment, and analysis of genomic regions with small RNA clusters derived from small RNA sequencing data.

rca

Residual Component Analysis

reading-pca

readquant

Convenience package for parsing RNA-seq quantification results

reana

REANA: Reusable research data analysis platform

redis-py

Redis Python Client

refinery-platform

The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. The platforms consists of three major components: a data repository with rich metadata capabilities, a workflow engine based on the popular Galaxy system, and visualization tools to support the exploration and interpretation of results at all stages of the analysis process.

relational-networks

Pytorch implementation of "A simple neural network module for relational reasoning" (Relational Networks)

restbridge

Exposes a REST interface for C++ applications

ringtest

performance testing of NEURON and CoreNEURON

rna-protein

rnapred

Code for RNA-seq prediction based on chromatin and exon arrays

roaringbitmap

Roaring Bitmap in Cython

sailor

CWL+Singularity implementation of an RNA editing workflow

sambamba

Tools for working with SAM/BAM/CRAM data

sampled-ensemble-neutrality

sc_snakemake

scanpy

Single-Cell Analysis in Python. Scales to very high cell numbers.

scatac

scatac-1

Multiplex single-cell ATAC-seq analysis pipeline (Ren Lab)

scatac-seq

scatacseq

scg_lib_structs

Collections of library structure and sequence of popular single cell genomic methods

scilife-python-course

scrnatb

Single Cell RNA-Seq analysis toolbox for Python

sdrem

Signaling and Dynamic Regulatory Events Miner

seecer