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Ruben Vorderman's Projects

picard icon picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

requests icon requests

Python HTTP Requests for Humans™ ✨🍰✨

scopt icon scopt

simple scala command line options parsing

setuptools icon setuptools

Official project repository for the Setuptools build system

staged-recipes icon staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

talon icon talon

Technology agnostic long read analysis pipeline for transcriptomes

tools-iuc icon tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission

typeshed icon typeshed

Collection of library stubs for Python, with static types

umi-tools icon umi-tools

Tools for handling Unique Molecular Identifiers in NGS data sets

vcfcompare2venn icon vcfcompare2venn

Small script to parse vcfcompare's output directly into a venn diagram.

virtual-clusters icon virtual-clusters

Recipes for setting up a local virtual cluster using specific scheduling engines.

wdl icon wdl

Workflow Description Language - Specification and Implementations

wdltools icon wdltools

WDL tools for parsing, type-checking, and more

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