rhshah Goto Github PK
Name: Ronak Shah
Type: User
Company: @mskcc @msk-access
Bio: Computational Biologist working to build/execute strategies for in-depth analysis of NGS data
Twitter: rshah7
Location: New York, NY
Ronak Shah's Projects
aws-batch-genomics
Software sets up and runs an genome sequencing analysis workflow using AWS Batch and AWS Step Functions.
azure-genomics-poc
POC for Genomics on Azure
basicfiltering
Basic filtering scripts for various mutation calling tools
behold
A Debugging Tool
bic-variants_pipeline
BIC@MSKCC Variants Pipeline
book
Compiled and pretty version of labs
caw
Cancer Analysis Workflow: a complete open source pipeline to detect somatic variants from WGS data
cmo
Python Package for the CMO
comut
CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots
csf_2018_scripts
Contains Scripts Created for Plotting results of CSF project
cutadapt
cutadapt removes adapter sequences from sequencing reads
d3_impact_copy_number
Visualization code for impact copy number data based on D3 library
d3workshop
Angular Material Design application to support the D3 workshop I am teaching.
description-extractor
HGVS variant description extractor
detect_hotspot_sv
Filtering Delly Raw results for Hotspots
dmp-facet-wrapper
Wrapper R script to run facet
docker-aws
Dockerized AWS CLI
exome-pipeline
This is the Fork of IMPACT-Pipeline modified for exome
fillout_impact
foam
A personal knowledge management and sharing system for VSCode
genomics-workshop
Genomics workshop information
genotype_variants
Project to genotype SNV, INDEL and SV.
ggsignif
Easily add significance bars to your ggplots
github-readme-stats
:zap: Dynamically generated stats for your github readmes
github-stats
gooey
Turn (almost) any Python command line program into a full GUI application with one line
halve
Stylish Two-Column Jekyll Theme
iannotatesv
iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Generation DNA sequencing data.
icallsv
A Framework to call Structural Variants from NGS based datasets
igv.js-flask
Example project for integrating igv.js and flask
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