rhshah Goto Github PK
Name: Ronak Shah
Type: User
Company: @mskcc @msk-access
Bio: Computational Biologist working to build/execute strategies for in-depth analysis of NGS data
Twitter: rshah7
Location: New York, NY
Ronak Shah's Projects
remove_variants
This repo helps to remove simple variants at complex variant sites
replace_allele_counts
This repo helps to replace the allele counts in maf file after genotyping
reviews
Writing reviews of academic papers
rhshah
rhshah.github.io
About Me
rnaseq-cfu-e-2018
Clustering and differential analysis of CFU-E cells with different conditions
rprojects
Multiple R Projects
sh
Python process launching
sourcerer-app
🦄 Sourcerer app makes a visual profile from your GitHub and git repositories.
sv_annotator
svpv
Structural Variant Prediction Viewer
targetseqview
Visualize next generation sequencing reads over putative structural variants
tronco
Repository of the TRanslational ONCOlogy library, which includes various algorithms such as CAPRESE and CAPRI.
vcf2maf
Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)
vcf2maf-1
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
venn-tools
R scripts to plot Venn diagrams for 2,3,4-way Venn from counts
wes-filters
Filters for false-positive mutation calls in whole-exome sequencing
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