This project shares scripts for processing outputs from biosequence analysis using profile hidden Markov models (HMM)
Extract_HMM_Using_Keywords.py A python script for extracting HMM models by keyword match to HMM name and annotations.
Extract_HMM_Using_ID.py A python script for extracting HMM models using IDs.
Extractor_Domain_Tlout_Besthit_QueryIDs.py A python script for extracting the first best domain hit and query sequence ids from hmmscan output Example folder file: example.domain.tlout
HmmScan_BreakPoint_Checker_Batch.py A python script for identifying the breakpoints of hmmscan search of domains on open reading frames (ORFs), and return the finished domain.tlout files and unfinished fasta files