rosemary94,github

bcr_tcr_processing_pipeline

BCR/TCR processing pipeline for NGS data

CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offering functionalities for downstream analysis of clustering results.

covid_vax_cd8

Data and scripts for study Minervina, Pogorelyy et al. 2021

deeptcr

Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data

ggheatmap

ggplot2 version of heatmap

immprint

ImmPrint answers the question "were these two samples extracted from the same individual ?" by looking at the numbers and sequences of shared unique TCR between the two samples.

immunarch

🧬 Immunarch by ImmunoMind: R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

interactive-data-visualization-with-python

Present your data as an effective and compelling story

jupyter

Jupyter metapackage for installation, docs and chat

mixcr

MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.

pwseqdist

A small package that efficiently computes distances between genetic sequences. Can accommodate similarity matrices, sequences of different lengths and custom metrics.