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BCR/TCR processing pipeline for NGS data
CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offering functionalities for downstream analysis of clustering results.
Data and scripts for study Minervina, Pogorelyy et al. 2021
Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
ggplot2 version of heatmap
ImmPrint answers the question "were these two samples extracted from the same individual ?" by looking at the numbers and sequences of shared unique TCR between the two samples.
🧬 Immunarch by ImmunoMind: R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
Present your data as an effective and compelling story
Jupyter metapackage for installation, docs and chat
MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.
A small package that efficiently computes distances between genetic sequences. Can accommodate similarity matrices, sequences of different lengths and custom metrics.
A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.
A scanpy extension to analyse single-cell TCR and BCR data.
[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery
Classifier to determine CD8+ T-cell receptor characteristics underlying peptide recognition.
Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
A deep learning network for predicting TCR-pMHC binding
Companion repository of https://www.biorxiv.org/content/early/2018/06/28/353128
Quantifiable predictive features define epitope-specific T cell receptor repertoires
flexible CDR based distance metrics
Scripts for automating the running of TCRdist
regex based motif discovery
Git-based TCR database storage & management. Submissions welcome!
Post-analysis of immune repertoire sequencing data
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.