Select the correct binary download for your platform from the available releases
- Download and extract zip to desired application directory.
- Execute Anonymizer.exe and override User Account Control to allow the program to "Run anyway".
- Logs will be written to
~/AppData/Local/Anonymizer
- Download and extract zip file to desired application directory.
- Mount the disk by clicking the
Anonymizer_17.*.dmgfile where * is the relevant version. - In the finder window presented, drag the Anonymzier icon to Applications folder.
- Wait for the Application to be decompressed and copied.
- Open a terminal (
/Applications/Utilities/Terminal) - To remove extended attributes, in the terminal, execute the command:
xattr -rc /Applications/Anonymizer_17.*.app. - Double click the application icon to execute.
- Logs will be written to
~/Library/Logs/Anonymizer/anonymizer.log
- Download and extract zip file to desired application directory.
- Open terminal cd to application directory
chmod +x Anonymizer_17.*where * is the relevant version- Execute
./Anonymizer_17.* - Logs will be written to
~/Logs/Anonymizer/anonymizer.log
- Setup python enviroment (>3.10), recommend using pyenv
pip install pipenv- Clone repository
- Setup virtual enviroment and install all dependencies listed in Pipfile:
pipenv install --dev
1. Create tests/controller/.env file with your AWS_USERNAME and AWS_PASSWORD
2. pipenv shell
3. coverage run -m pytest tests
4. coverage report --omit="tests/*"
- If building on OSX ensure create-dmg is installed:
brew install create-dmg pipenv shellcd srcpython build.py- Executable will be in
src/dist
- See:
.github/workflows/build.yml - Triggered by push and pull request on master branch
- Includes executable build step using
build.py
1. pipenv shell
2. radon raw -i "tests,docs,prototyping" . > radon_results.txt
3. python src/radon_raw_totals.py
Languages for 17.1: en_US, de, es, fr
- Windows: Install instructions or
choco install gettext - Mac OSX:
brew install gettext - Linux:
sudo apt-get install gettext
Execute assets/locales/extract_translations.sh
Execute assets/locales/update_translations.sh
Full class diagram here
Two python classes pickled to files in project directory:
./ProjectModel.pkl when project settings change
./private/AnonymizerModel.pkl every 30 secs if files were stored
classDiagram
class DICOMNode {
<<model.project>>
+ ip
+ port
+ aet
+ local
}
class NetworkTimeouts {
<<model.project>>
+ tcp_connection
+ acse
+ dimse
+ network
}
class LoggingLevels {
<<model.project>>
+ anonymizer
+ pynetdicom
+ pydicom
}
class AWSCognito {
<<model.project>>
+ account_id
+ region_name
+ app_client_id
+ user_pool_id
+ identity_pool_id
+ s3_bucket
+ s3_prefix
+ username
+ password
}
class ProjectModel {
<<model.project>>
+ MODEL_VERSION
+ PRIVATE_DIR
+ PUBLIC_DIR
+ PHI_EXPORT_DIR
+ QUARANTINE_DIR
+ RSNA_ROOT_ORG_UID
+ IMPLEMENTATION_CLASS_UID
+ IMPLEMENTATION_VERSION_NAME
+ site_id
+ project_name
+ uid_root
+ storage_dir
+ modalities
+ storage_classes
+ transfer_syntaxes
+ anonymizer_script_path
+ export_to_aws
}
ProjectModel --* "1" LoggingLevels: logging_levels
ProjectModel --* "1" NetworkTimeouts: network_timeouts
ProjectModel --* "1" AWSCognito: aws_cognito
ProjectModel --* "1" DICOMNode: scu
ProjectModel --* "1" DICOMNode: scp
ProjectModel --* "*" DICOMNode: remote_scps
class Series {
<<model.anonymizer>>
+ series_uid
+ series_desc
+ modality
+ instance_count
}
class Study {
<<model.anonymizer>>
+ source
+ study_uid
+ study_date
+ anon_date_delta
+ accession_number
+ study_desc
+ target_instance_count
}
Study "1" --* "*" Series: series
class PHI{
<<model.anonymizer>>
+ patient_name
+ patient_id
+ sex
+ dob
+ ethnic_group
}
PHI "1" --* "*" Study: studies
class AnonymizerModel {
<<model.anonymizer>>
+ MODEL_VERSION
+ MAX_PATIENTS
+ default_anon_pt_id
- _version
- _site_id
- _uid_root
- _uid_prefix
- _tag_keep
- _patient_id_lookup
- _uid_lookup
- _acc_no_lookup
- _patients
- _studies
- _series
- _instances
}
AnonymizerModel "1" --* "*" PHI: _phi_lookup
Main control class, descendent of pynetdicom.ApplicationEntity handling all DICOM file and network i/o.
Provides API & worker threads to anonymize queued DICOM files incoming from network or file system.
classDiagram
class ProjectModel {
<<model.project>>
}
class AnonymizerModel {
<<model.anonymizer>>
}
class ApplicationEntity {
<<pynetdicom.ae>>
}
class Dataset {
<<pydicom.Dataset>>
}
class PresentationContext {
<<pynetdicom.presentation>>
}
class Event {
<<pynetdicom.events>>
}
Event "1" ..> "1" Dataset
class Association {
<<pynetdicom.association>>
}
Association "1" ..> "*" Dataset
class AnonymizerController {
<<controller.anonymizer>>
}
AnonymizerController --* AnonymizerModel
AnonymizerController --> ProjectModel
AnonymizerController "1" ..> "*" Dataset
class InstanceUIDHierarchy {
<<controller.project>>
+ uid
+ number
}
class SeriesUIDHierarchy {
<<controller.project>>
}
SeriesUIDHierarchy "1" --* "*" InstanceUIDHierarchy: instances
class StudyUIDHierarchy {
<<controller.project>>
}
StudyUIDHierarchy "1" --* "*" SeriesUIDHierarchy: series
class EchoRequest {
<<controller.project>>
}
class EchoResponse {
<<controller.project>>
}
class FindStudyRequest {
<<controller.project>>
}
class FindStudyResponse {
<<controller.project>>
}
FindStudyResponse "1" --* "1" Dataset: status
FindStudyResponse "1" --* "1" Dataset: study_result
class MoveStudiesRequest {
<<controller.project>>
}
MoveStudiesRequest "1" --* "*" StudyUIDHierarchy: studies
class ExportPatientsRequest {
<<controller.project>>
}
class ExportPatientsResponse {
<<controller.project>>
}
class ProjectController {
<<controller.project>>
}
ApplicationEntity <|-- ProjectController
ProjectController "1" --* "1" ProjectModel
ProjectController "1" --* "1" AnonymizerController
ProjectController "1" ..> "*" Dataset
ProjectController "1" ..> "*" PresentationContext
ProjectController "1" ..> "*" Event
ProjectController "1" ..> "*" Association
ProjectController "1" ..> "1" EchoRequest
ProjectController "1" ..> "1" EchoResponse
ProjectController "1" ..> "*" StudyUIDHierarchy
ProjectController "1" ..> "1" FindStudyRequest
ProjectController "1" ..> "*" FindStudyResponse
ProjectController "1" ..> "1" MoveStudiesRequest
ProjectController "1" ..> "1" ExportPatientsRequest
ProjectController "1" ..> "*" ExportPatientsResponse
Python standard library for GUI: Tkinter (interface to Tk toolkit written in C) enhanced using UI library CustomTkinter.
UI colors and fonts are set by ctk.ThemeManager from assets/themes/rsna_theme.json which handles appearance modes: System, Light & Dark.
Main application class (ctk.CTk) with context sensitive menu (project open or closed)
First view on fresh program start when no project open
Render html help files with simplified tag set using tkhtmlview library
Configures ProjectModel => DICOMNodeDialog, AWSCognitoDialog, NetworkTimeoutsDialog, ModalitiesDialog, SOPClassesDialog, TransferSyntaxesDialog, LoggingLevelsDialog
Displays project metrics and provides buttons for QueryView & ExportView
Query remote scp and import studies using C-MOVE at specified level
Display status of current C-MOVE import operation triggered from QueryView
Display status of file import operation triggered from menu File/Import Files or File/Import Directory
Export anonymized studies to remote scp or AWS
classDiagram
class ProjectController {
<<controller.project>>
}
class AnonymizerController {
<<controller.anonymizer>>
}
class Tk {
<<tkinter>>
}
class CTk {
<<customtkinter>>
}
class WelcomeView {
<<view.welcome>>
}
class HTMLScrolledText {
<<tkhtmlview>>
}
class RenderHTML {
<<tkhtmlview>>
}
class HTMLView {
}
HTMLView "1" --* "1" HTMLScrolledText
HTMLView "1" --* "1" RenderHTML
class DICOMNodeDialog {
<<view.dicom_node_dialog>>
}
DICOMNodeDialog "1" --* "1" DICOMNode
class AWSCognitoDialog {
<<aws_cognito_dialog>>
}
AWSCognitoDialog "1" --* "1" AWSCognito
class NetworkTimeoutsDialog {
<<view.settings.network_timeouts.dialog>>
}
NetworkTimeoutsDialog "1" --* NetworkTimeouts
class ModalitiesDialog {
<<view.settings.modalities_dialog>>
}
class SOPClassesDialog {
<<view.settings.sop_classes_dialog>>
}
class TransferSyntaxesDialog {
<<view.settings.transfer_syntaxes_dialog>>
}
class LoggingLevelsDialog {
<<view.settings.logging_levels_dialog>>
}
LoggingLevelsDialog "1" --* LoggingLevels
class SettingsDialog {
<<view.settings.settings_dialog>>
}
SettingsDialog "1" ..> "*" JavaAnonymizerExportedStudy
SettingsDialog "1" --* "1" DICOMNodeDialog: local_server
SettingsDialog "1" --* "1" DICOMNodeDialog: query_server
SettingsDialog "1" --* "1" DICOMNodeDialog: export_server
SettingsDialog "1" --* "1" AWSCognitoDialog: aws_cognito
SettingsDialog "1" --* "1" NetworkTimeoutsDialog: network_timeouts
SettingsDialog "1" --* "1" SOPClassesDialog: sop_classes
SettingsDialog "1" --* "1" TransferSyntaxesDialog: transfer_syntaxes
SettingsDialog "1" --* "1" LoggingLevelsDialog: logging_levels
class Dashboard {
<<view.dashboard>>
}
Dashboard "1" --> "1" ProjectController
Dashboard "1" ..> "1" Totals
class QueryView {
<<view.query_retrieve_import>>
}
QueryView "1" --> "1" ProjectController
QueryView "1" --> "1" Dashboard
class ImportStudiesDialog {
<<import_studies_dialog>>
}
ImportStudiesDialog "1" --> "1" ProjectController
ImportStudiesDialog "1" ..> "*" StudyUIDHierarchy
ImportStudiesDialog "1" ..> "1" MoveStudiesRequest
class ImportFilesDialog {
<<view.import_files_dialog>>
}
ImportStudiesDialog "1" --> "1" AnonymizerController
class ExportView {
<<view.export>>
+ __init__(parent, project_controller, title)
+ get_input()
}
ExportView "1" --> "1" ProjectController
ExportView "1" --> "1" Dashboard
Tk <|-- CTk
class Anonymizer {
<<anonymizer>>
}
CTk <|-- Anonymizer
Anonymizer "1" --* "1" ProjectController: controller
Anonymizer "1" --* "1" WelcomeView: welcome_view
Anonymizer "1" --* "1" QueryView: query_view
Anonymizer "1" --* "1" ExportView: export_view
Anonymizer "1" --* "1" Dashboard: dashboard
Anonymizer "1" --* "*" HTMLView: help_views
Anonymizer "1" --* "1" SettingsDialog
Anonymizer "1" --* "1" ImportStudiesDialog
Anonymizer "1" --* "1" ImportFilesDialog
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