Name: Ruben Chazarra-Gil
Type: User
Company: Barcelons Supercomputing Centre
Bio: PhD Student at the Transcriptomics and Functional Genomics Lab at Barcelona Supercomputing Centre (BSC-CNS)
Twitter: rubenchazarrag
Location: Barcelona,Spain
Blog: https://www.bsc.es/discover-bsc/organisation/scientific-structure/transcriptomics-and-functional-genomics-lab-tfgl
Ruben Chazarra-Gil's Projects
This is the repo for the Mele Lab 2022 Retreat Mini Hackathon
Repo on the 2023-04 Single-cell in da House Session on Dimensionality Reduction
Including dataset cross validation step in workflow
Deploy CellxGene app in Heroku
A Docker image for Cellgeni JupyterHub installation
My personal repo
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Single-cell in da House Session 2. Xavier Soler presenting on Single-cell CUT&TagPRO data normalization strategies
Nextflow implementation of SpliZ
Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
Method for retrieving and visualising the protein domains of any protein coding isoform and of different genomes. Enables joint visualisations representing alternative splicing events.
This is a collection of useful pieces of code I am generating during my PhD at BSC
Part of the sc-eQTLgen consortium pipeline. Step 1, where the QC is done.