ryanlayer Goto Github PK
Name: Ryan Layer
Type: User
Company: University of Colorado, Computer Science and BioFrontiers
Location: Boulder, CO
Blog: http://layerlab.org/
Ryan Layer's Projects
mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
new_repo
SWE4S tests (python)
nway
nway
plotcritic
python-giggle
python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.
samblaster
samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.
samplot
Plot structural variant signals from many BAMs and CRAMs
sandbox
To play
sdlgks-dlagkfals
set_intersection
Find intersection significance
software-project
Short description that will help you and others find this
ssec2
Stupid Simple Elastic Compute Cloud
ssshtest
Stupid Simple (ba)Sh Testing - A functional software testing framwork
stix
Structural Variant Index
stix_paper
Analysis for the STIX paper
sv-plaudit
Pipeline for structural variant image curation and analysis.
sv_graph
SV Graph
svtyper
Bayesian genotyper for structural variants
svv
Stupid Simple Structural Variant View
tools
Smaller projects
utils
vcfanno
annotate a VCF with other VCFs/BEDs/tabixed files
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