ryanlayer Goto Github PK
Name: Ryan Layer
Type: User
Company: University of Colorado, Computer Science and BioFrontiers
Location: Boulder, CO
Blog: http://layerlab.org/
Name: Ryan Layer
Type: User
Company: University of Colorado, Computer Science and BioFrontiers
Location: Boulder, CO
Blog: http://layerlab.org/
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
SWE4S tests (python)
nway
python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.
samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.
Plot structural variant signals from many BAMs and CRAMs
To play
Find intersection significance
Short description that will help you and others find this
Stupid Simple Elastic Compute Cloud
Stupid Simple (ba)Sh Testing - A functional software testing framwork
Structural Variant Index
Analysis for the STIX paper
Pipeline for structural variant image curation and analysis.
SV Graph
Bayesian genotyper for structural variants
Stupid Simple Structural Variant View
Smaller projects
annotate a VCF with other VCFs/BEDs/tabixed files
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