rzhu40/asn_simulation

Efficiency improved, multi-electodes enabled code for Zdenka's group.

ASN_simulation

Efficiency improved, multi-electodes enabled code for Zdenka's group.

To Start

• If one hopes to use single pair of source and drain, just imporve the efficiency of Ido's code, please go here: https://github.com/rzhu40/ASN_simulation/blob/master/Improve%20Old%20Code/README.md.
• MatLab user guide: https://github.com/rzhu40/ASN_simulation/blob/master/MatLab/README.md.
• Python user guide: https://github.com/rzhu40/ASN_simulation/blob/master/Python/README.md.

TO-DOs

• Enable network visualization in MatLab code(Left the snapshot API usable from Ido's code).
• Write new network generator in MatLab and Python.
• Enable time-dependent plotting in python code (with a slider for time points).
• Enable movie compiling in python.
• Re-pacakage Ido's code to make a lite version with multi-electrodes enabled.
• At some stage, figure out a way to enable other circuit components like capacitors and inductors.

DO notice

• The improvement of simulation is done based on Nodal analysis. https://www.swarthmore.edu/NatSci/echeeve1/Ref/mna/MNA3.html

• Still need to test more for multi-electrodes simulations. Don't hesitate to contact me if there are any bugs or requirements.

• The output dynamics are recording things slightly different from Ido's code (message me or feel free to record what ever data one needs from simulation).

• Most of my codes are written in python first then MatLab. Please CONSIDER python :).

  I will upload a bench mark for comparison between python and MatLab. Most importantly, python code is plotting with plot.ly https://plot.ly/python/, which makes beautiful and most importantly Interactive snapshots of the network.