Sample Prioritizations are there, but not getting group prioritizations

[saeyslab]

Sample Prioritizations are there, but not getting group prioritizations

[browaeysrobin]

Hi @pdimitron

To help pinpoint the exact issue, it would be helpful if you could:

1. run an analysis based on a vignette showcasing the wrapper function.
2. try the "basic_analysis_steps_MISC.Rmd" vignette by using the dev-branch version of this package for now on (https://github.com/saeyslab/multinichenetr/blob/dev-branch/vignettes/basic_analysis_steps_MISC.Rmd).

Do you run into troubles for one of those as well?

[pdimitron]

Hi @browaeysrobin, when I ran it with the wrapper function all was well and it actually pointed me to the source of the issue.

When setting up the contrasts, I followed the notation carefully when putting in my own variables, but then I realized the contrasts argument in contrasts_tbl has a slightly difference format. I was able to fix the issue.

Thank you for responding!