Unable to install LIANA because of omnipathr dependency

[joan-yanqiong]

Unable to install LIANA because of omnipathr dependency

[deeenes]

Hi,

Sorry for the late answer! It looks like an issue with the line endings or encoding of the file ~/.config/OmnipathR/omnipathr.yml. What do you see if you look into this file:

# in bash:
less ~/.config/OmnipathR/omnipathr.yml

Or check it by wc and file:

# in bash:
wc ~/.config/OmnipathR/omnipathr.yml
file ~/.config/OmnipathR/omnipathr.yml

Do you experience the same error when you directly call yaml.load on the file?

library(yaml)
yaml.load(readLines(file('~/.config/OmnipathR/omnipathr.yml')))

What does the readLines return?

readLines(file('~/.config/OmnipathR/omnipathr.yml'))

Is it different if you specify an encoding?

readLines(file('~/.config/OmnipathR/omnipathr.yml', encoding = 'UTF-8'))

Which operating system are you using?

[joan-yanqiong]

Hi, thanks but I was able to solve the problem in the meantime.