Error in retrieving interactions from Omnipath

[EugeniaRadulescu]

Error in retrieving interactions from Omnipath

[deeenes]

Dear Eugenia,

Sorry for the very late answer. This issue is the same as the pinned issue, and the problem has been fixed in February. Please try to install the latest version of the package:

remotes::install_github('saezlab/OmnipathR')

Best,

Denes

[deeenes]

Hi Lucile,

I think the most likely reason is that you have the old version loaded in your session despite you've already installed the new one. If even after starting a new session you experience the error, please check if the path where you updated OmnipathR is in the library paths of your R session (.libPaths()).

If you're indeed using the latest version of the package, that means you found a new error which has different reasons than the one above. In this case, please post here the output of traceback() and rlang::last_error().

Best,

Denes

[lmassenet-regad]

Hi Denes, it worked after starting a new session. Thanks !

[ritsuya-niwayama-servier]

Dear OmniPath team,
I have the same problem in R while it could be due to my setting.
For Python client, it works for me.
Thanks!

Kind regards
Ritsuya

[lmassenet-regad]

Hello,
I get the following error, even after reinstalling with the latest version of the package mentioned on your last post. Do you know what I can do to solve this problem ?
Thank you in advance for your help,
Best,
Lucile