Comments (5)
Also important to Report that the python env ist completely clean and that the code works in Google colab but i need it to be able to run in local
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Thanks, we should have caught this (seems to be coming from a change at the NCBI end though). Can you try pulling from the master branch and retry?
pip install git+https:://github.com/saketkc/pysradb
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Works for me, thanks!
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Hi. Thanks for fixing this problem. We also encountered it just today and wanted to report this..
Not neccessary at this point anymore. But here's our solution: it seems like xmltodict
0.13.0 is causing the problem. Downgrading it to 0.12.0 solved it for us.
edit: xmltodict 0.13.0 uses dict instead of OrderedDict now (as reported in the issue tracker of xmltodict)
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Thanks. This should now be fixed in v.1.4.
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Related Issues (20)
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