UnboundLocalError

[BiomedicLJZ]

UnboundLocalError

[BiomedicLJZ]

Also important to Report that the python env ist completely clean and that the code works in Google colab but i need it to be able to run in local

[saketkc]

Thanks, we should have caught this (seems to be coming from a change at the NCBI end though). Can you try pulling from the master branch and retry?

pip install git+https:://github.com/saketkc/pysradb

[jbmorlot]

Works for me, thanks!

[phyden]

Hi. Thanks for fixing this problem. We also encountered it just today and wanted to report this..

Not neccessary at this point anymore. But here's our solution: it seems like xmltodict 0.13.0 is causing the problem. Downgrading it to 0.12.0 solved it for us.

edit: xmltodict 0.13.0 uses dict instead of OrderedDict now (as reported in the issue tracker of xmltodict)

[saketkc]

Thanks. This should now be fixed in v.1.4.