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Sam Nicholls's Projects

jbrowse-components icon jbrowse-components

Monorepo with JBrowse 2 web, JBrowse 2 desktop, the JB core package, and core plugins. To customize behaviors, write an in-house plugin.

kraken2 icon kraken2

The second version of the Kraken taxonomic sequence classification system

latex-boiler icon latex-boiler

An arbitrary boilerplate based on https://github.com/kks32/phd-thesis-template

likert icon likert

Package to analyze likert based items.

majora2 icon majora2

Malleable All-seeing Journal Of Research Artifacts

medaka icon medaka

Sequence correction provided by ONT Research

midna icon midna

mildly informative display of notable actions

minidot icon minidot

Fast and pretty dotplots for whole genomes assemblies using minimap2 and R/ggplot2

mountain icon mountain

A work in progress collection of simple but possibly useful genetics tools.

naaaavi icon naaaavi

Naming avoiding ambiguity automatically assigning valid identifiers

nextflow icon nextflow

A DSL for data-driven computational pipelines

nf-core-tools icon nf-core-tools

Python package with helper tools for the nf-core community.

ngs-qc icon ngs-qc

Quality Control for Next Generation Sequencers

ngsqc icon ngsqc

Next Generation Quality Control for Sequencing

ocarina2 icon ocarina2

on-computer agent (for) remembering input actions

openrw icon openrw

OpenRW "Open ReWrite" is an un-official open source recreation of the classic Grand Theft Auto III game executable

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