sann5/q2-checkm

QIIME 2 plugin for assessing the quality of (meta)genomes using CheckM.

q2-checkm

QIIME 2 plugin for assessing the quality of (meta)genomes using CheckM.

Notes on CheckM version: CheckM version currently used by q2-checkm is pinned to a specific commit: https://github.com/Ecogenomics/CheckM.git@8b42a8ca13dda3a967e2247efe6032f9df1bd434. We are not using the corresponding version available through conda, as it has pplacer as a pinned dependency (and this dependency cannot be resolved on some systems). Instead, we are manually taking care of checkm's dependencies and just installing it through pip.