satra/dcmstack

DICOM to Nifti conversion with meta data preservation

dcmstack

This package provides DICOM to Nifti conversion with the added ability to extract and summarize meta data from the source DICOMs. The meta data can be injected it into a Nifti header extension or written out as a JSON formatted text file.

Documentation

Documentation can be read online: https://dcmstack.readthedocs.org/

You can build the HTML documentation under build/sphinx/html with:

$ python setup.py build_sphinx

If you have the sphinx and numpydoc packages and a make command you can build the documentation by running the make command in the doc/ directory. For example, to create the HTML documentation you would do:

$ make html

And then view doc/_build/html/index.html with a web browser.

Running Tests

You can run the tests with:

$ python setup.py test

Or if you already have the nose package installed you can use the nosetests command in the top level directory:

$ nosetests

Installing

You can install the .zip or .tar.gz package with the easy_install command.

$ easy_install dcmstack-0.6.zip

Or you can uncompress the package and in the top level directory run:

$ python setup.py install