Name: Spencer Bliven
Type: User
Company: Paul Scherrer Institute
Bio: Bioinformatician & Open source developer. Interests in computational biology, machine learning, visualization, 3D printing, and mathematics.
Location: Zurich, Switzerland
Blog: https://spencer.bliven.us
Spencer Bliven's Projects
A Jupyter widget for displaying genomic data using the Dalliance browser
The git mirror of the biojava based DAS registry
Library for creating gem painting templates
Docker image for gaviewer, software to explore geometric algebra visually and companion to the book 'Geometric Algebra for Computer Science' by Leo Durst, Daniel Fontijne and Stephen Mann.
A Jekyll-based theme designed for documentation and help systems. See the link for detailed instructions on setting up and configuring everything.
config files for bash, vim, git, pymol, etc.
Earthcraft: the real-world minecraft experience
Class projects for CSE 250B, AI:Learning. All code © Spencer Bliven, Jonas Hölzler, and Andreas Landstad. Migrated from https://bitbucket.org/sbliven/elkan_ml/
An emacs course
An Emacs Course and Configuration
ENML(Evernote Markup Language) Editor
Evolutionary protein-protein interface classifier
This repository contains python scripts to calculate EPPIC results for each new UniProt release and to perform weekly topup in EPPIC db
Factorio Planner
Python implementation of Philip J. Schneider's "Algorithm for Automatically Fitting Digitized Curves" from the book "Graphics Gems"
High Throughput Electron Microscopy Image Processing Software
forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
SciCat open data catalogue web client
Google Drive Download Python Script
3D geometry library for python. Forked from http://code.google.com/p/geometry-simple/
Python wrapper for accessing GPCRdb (https://gpcrdb.org/)
Dockerize the hhrepid tool for tandem repeat identification
Jupyter widget to display sequences using a Protein Feature View widget
Code comparing answers to https://stackoverflow.com/questions/47796889/combining-posts-with-different-layouts-on-one-page-in-jekyll-liquid/48323356
A web-based tool to view, edit, format, and validate JSON
A simple Python library for converting between Julian dates and datetime objects.
Tool for organizing and renaming photos
A repository to host the competition for a new BioJava log