scenerygraphics/sciview

sciview is a tool for visualization and interaction with ND image and mesh data

sciview - interactive visualisation in vr for fiji & imagej2

SciView is an ImageJ/FIJI plugin for 3D visualization of images and meshes. It uses scenery as a rendering backend and supports rendering to VR headsets via OpenVR.

sciview running the Game of Life 3D demo (see Demo > Game of Life 3D).

Documentation is being developed.

Adding to Fiji

Detailed installation instructions can be found in the sciview gitbook.

Should you experience any issues, please try the latest development version, which includes all the latest features and fixes.

Quick Start

Developers

Kyle Harrington, University of Idaho & Ulrik Guenther, MPI-CBG

Contributors

• Curtis Rueden (University of Wisconsin, Madison)
• Aryaman Gupta (MPI-CBG)
• Tobias Pietzsch (MPI-CBG)
• Robert Haase (MPI-CBG)
• Jan Eglinger (FMI Basel)
• Stephan Saalfeld (HHMI Janelia Farm)

Citation

In case you use sciview or scenery in a scientific publication, please cite this paper:

• Ulrik Günther, Tobias Pietzsch, Aryaman Gupta, Kyle I.S. Harrington, Pavel Tomancak, Stefan Gumhold, and Ivo F. Sbalzarini: scenery — Flexible Virtual Reality Visualisation on the Java VM. IEEE VIS 2019 (accepted, arXiv:1906.06726).

Resources

• Media/videos created with SciView

DevOps

Triggering uploads to the update site:

Add either [SV_IJ_DEPLOY_UNSTABLE] or [SV_IJ_DEPLOY_PRIMARY] to a commit message

Acknowledgements

This software contains the following 3rd party libraries:

• IntelliJ UI code, by JetBrains (licensed under the Apache Software License 2.0), see src/main/java/com/intellij
• trove4j, by the Trove4j team (licensed under the Lesser GNU Public License 3.0), see src/main/java/gnu