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Schaudge's Projects

cuttlefish icon cuttlefish

Building the compacted de Bruijn graph efficiently from references or reads.

dashing2 icon dashing2

Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.

dask icon dask

Parallel computing with task scheduling

deep-review icon deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

deeptype icon deeptype

Design, evolve, and train neural type systems.

delly icon delly

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

diamond icon diamond

Accelerated BLAST compatible local sequence aligner.

dl4nlp icon dl4nlp

Deep Learning for NLP resources

dlib icon dlib

A toolkit for making real world machine learning and data analysis applications in C++

dnc icon dnc

A TensorFlow implementation of the Differentiable Neural Computer.

dozeu icon dozeu

SIMD-parallel BLAST X-drop DP on sequence graphs

dragonfly icon dragonfly

A modern replacement for Redis and Memcached

e1071 icon e1071

:exclamation: This is a read-only mirror of the CRAN R package repository. e1071 — Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien

echtvar icon echtvar

echt rapid variant annotation and filtering

edlib icon edlib

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

eladmin icon eladmin

项目基于 Spring Boot 2.1.0 、 Jpa、 Spring Security、redis、Vue的前后端分离的后台管理系统，项目采用分模块开发方式， 权限控制采用 RBAC，支持数据字典与数据权限管理，支持一键生成前后端代码，支持动态路由

elprep icon elprep

elPrep: a high-performance tool for analyzing sequence alignment/map files in sequencing pipelines.

exomiser icon exomiser

A Tool to Annotate and Prioritize Exome Variants

facets icon facets

Visualizations for machine learning datasets

fastapi icon fastapi

FastAPI framework, high performance, easy to learn, fast to code, ready for production

fastp icon fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

fgbio icon fgbio

Tools for working with genomic and high throughput sequencing data.

galaxy icon galaxy

Data intensive science for everyone.

ganon icon ganon

a read classification tool based on Interleaved Bloom Filters

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