sciinstitute/fluorender

FluoRender is an interactive rendering tool for confocal microscopy data visualization.

fluorender's Issues

Mailing list refusing access

I have tried to join the fluorender-users mailing list on two occassions (following the instructions on the website), and I get an error saing that it is undeliverable due to the recipient system refusing to accept a connection.... any help is appreciated.

Instructions that were followed:
Joining the FluoRender Users Mailing List

1. Compose an email to [email protected] with the following in the body of message: subscribe fluorender-users
   Nothing needed in the Subject line. Just send.
2. You will receive a response from the list manager requesting confirmation. Just send back a reply message to confirm your subscription (no added text needed).
3. Finally, you will receive a welcome message confirming that you have been added to the mailing list.

Linux support (Ubuntu 16.04)

Fluorender looks very interesting! I would like to try it on my data, but I only have Linux. There seems
to be no Linux support. If I add Linux support,would you be willing to consider such a pull request?

I already got to ~78% of the build. Until now there where mostly some minor issues with some missing
header includes, or uppercase/lowercase file name issues, and minor issues in the CMakeLists.txt.
Now I got to the first "real" problem: there is class KeyCode defined in Animator/FlKey.h. This name
collides with a name in:

/usr/include/X11/X.h:108:23: note: ‘KeyCode’ has a previous declaration here
 typedef unsigned char KeyCode;

To build on Linux I think its required to rename the class KeyCode to something else. Is that an
option?

missing libtiff with binary download on mac

Is there any chance that the precompiled binary FluoRender2.30_mac64.pkg could include libtiff? I am on macosx 14.5 / M3 chip and hesitating about installing homebrew intel (as would be required here) vs homebrew arm ...

Termination Reason:    Namespace DYLD, Code 1 Library missing
Library not loaded: /usr/local/opt/libtiff/lib/libtiff.6.dylib
Referenced from: <C4C17092-52A0-31A9-81CE-0388E9A452F2> /Applications/FluoRender.app/Contents/MacOS/FluoRender
Reason: tried: '/usr/local/opt/libtiff/lib/libtiff.6.dylib' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/usr/local/opt/libtiff/lib/libtiff.6.dylib' (no such file), '/usr/local/opt/libtiff/lib/libtiff.6.dylib' (no such file)
(terminated at launch; ignore backtrace)

OSX libfreetype.dyld depends on libpng16.dyld, not included in package

include this in the package for machines.

support for zeiss .czi files?

Hi -

Can you consider adding support of czi files generated by Zeiss Confocal Microscopes?

Thanks.

czi file renders z-resolution incorrectly

Thickness of some czi files are either too much or too little. Problematic file sent through WeTransfer. Thanks!

Linker cannot find wxWidgets

Hello,

I would like to build the newest FluoRender release on my Windows PC, but I have run into problems I could not solve.

I followed your guide on GitHub and I could successfully build both boost (1.78) and wxwidgets (3.1.6) using MSVC 14.2 (I use Visual Studio 2019).

CMake found wxwidgets by itself and it was my job to type in the path to boost.

Configuration passed without errors, the project was generated and it could be opened without problems.

However, I cannot build FluoRender at all. I get around 17000 errors complaining about various missing wxwidgets symbols and functions such as

Error LNK2001 unresolved external symbol "protected: static struct wxEventTable const wxWindow::sm_eventTable" (?sm_eventTable@wxWindow@@1UwxEventTable@@b) FluoRender D:\FluoRender\build2-27\VMovieView.obj

Error LNK2001 unresolved external symbol "public: virtual bool __cdecl wxWindow::LoadNativeDialog(class wxWindow *,class wxString const &)" (?LoadNativeDialog@wxWindow@@UEAA_NPEAV1@AEBVwxString@@@z) FluoRender D:\FluoRender\build2-27\Tester.obj

or

Error LNK2001 unresolved external symbol "public: virtual bool __cdecl wxWindow::RegisterHotKey(int,int,int)" (?RegisterHotKey@wxWindow@@UEAA_NHHH@Z) FluoRender D:\FluoRender\build2-27\BrushToolDlg.obj

As I said there are 17 000 of those. The program can not see wxWidgets at all, I think.

Are there any additional settings to the linker I have to fill in myself? I tried to add different additional (in addition to those set by CMake) directories to the additional dependencies, but it did not help.

I could build an older version of Fluorender (v2.25) without problems. The linked settings are the same, but the newer version does not get built.

I would be glad for any tips on how to fix this.

Thanks a lot in advance