scivision/pibayer

Acquire RAW Bayer-masked images with Raspberry Pi camera (before demosaicking) in Python

Raspicam raw Bayer mask pixels

Acquire RAW Bayer-masked images with Raspberry Pi camera (before demosaicking). Writes HDF5, NetCDF or TIFF compressed image stacks.

Install directly on the Raspberry Pi

apt install python3-numpy

python3 -m pip install -e .

Running the self-test must be done on a Raspberry Pi with camera module:

python3 -m pip install -e .[tests]

python3 -m pytest

To install advanced (HDF5, NetCDF4) image writing libraries:

apt install python3-netcdf4 python3-h5py

Tips

• Avoid MMAL errors: raspi-config → Advanced Options → Memory Split should be 128 MB, not 64 MB.
• Fix error "ImportError: libf77blas.so.3: cannot open shared object file: No such file or directory" by:

  apt install libatlas-dev

Examples

Setting of exposure time manually (seconds) is mandatory to avoid mistakes in experiments.

RAW live video display

python getrawimage.py 0.01 -a

Dump image stack to disk

• NetCDF: ./getrawimage.py 0.01 output.nc
• HDF5: ./getrawimage.py 0.01 output.h5
• TIFF: ./getrawimage.py 0.01 output.tif

Command-Line Options

• -a GPU-based preview, for aiming camera (fast)
• -p use Matplotlib for slow, live (10 seconds per frame) display
• -8 output 8-bit array instead of default 10-bit array

Notes

Constraints on exposure time

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ValueError: cannot save to a group with the scipy.io.netcdf backend

is fixed by:

apt install libnetcdf-dev

pip install netcdf4

pibayer's Issues

Error: __init__() got an unexpected keyword argument 'output_dims'

Hello, Please your help when I tried to run "python3.6 getrawimage.py 0.01 output.tif", there is an error that I couldn't solve:

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press Ctrl C to end program
camera startup gain autocal
auto AWB gains were 0.90234375 1.4453125
Traceback (most recent call last):
File "getrawimage.py", line 32, in
img = bayerseq(p.numimg, p.exposure)
File "/home/pi/Desktop/Multiespectral/raspicam-raw-bayer-master/pibayer/init.py", line 30, in bayerseq
r,c = getparams(cam)
File "/home/pi/Desktop/Multiespectral/raspicam-raw-bayer-master/pibayer/init.py", line 162, in getparams
img = grabframe(c)
File "/home/pi/Desktop/Multiespectral/raspicam-raw-bayer-master/pibayer/init.py", line 234, in grabframe
with picamera.array.PiBayerArray(cam, output_dims=2) as S:
TypeError: init() got an unexpected keyword argument 'output_dims'

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Do you know what I can do to let this code runs?