seifudd Goto Github PK
Name: Fayaz Seifuddin
Type: User
Company: National, Heart, Lung and Blood Institute
Bio: Scientific Researcher / Bioinformatics Scientist
Name: Fayaz Seifuddin
Type: User
Company: National, Heart, Lung and Blood Institute
Bio: Scientific Researcher / Bioinformatics Scientist
Another Gff Analysis Toolkit
AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shared between the two reference genomes and enables remapping across all parts of the references. Described by Kim et al. (preliminary version at http://arxiv.org/abs/1912.08735)
Don't run out of disk space on your EC2 instance when generating or working with large files. Automatically add EBS volumes to a filesystem mount point in response to disk utilization.
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
An integrated shell for working with the AWS CLI.
Provides classes for working with sets
docker images for bioinformatics
Bioinformatics one liners from Ming Tang
Scripts for analyzing and exploring lncRNA in bipolar RNA-Seq data
Print the Output of Intermediate Steps of a Call
cfDNA cell type of origin estimation
An interactive explorer for single-cell transcriptomics data
Code to accompany publication on cell free chromatin immunoprecipitation (cfChIP)
cfDNA Methylation Analysis
ChIP-seq analysis notes from Ming Tang
Scripts to analyze ChIP-Seq including Cut&Tag and Cut&Run data
The complete sequence of a human genome
"Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.
Teaching materials for the applied machine learning course at Cornell Tech
List of Computer Science courses with video lectures.
Common Workflow Language reference implementation
On top of spaghetti, all covered in cheese....
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
This repository contains scripts used in the dRNA sequencing with Nanopore thesis.
R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
Docker Cheat Sheet
Contains Dockerfiles for different tools. Docker images will be published as packages and will be associated to this repository
tools to efficiently retrieve and calculate LD
Ethnicity Annotation from Whole Exome Sequencing Data
Fast Gene Set Enrichment Analysis
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.