senaj Goto Github PK

penndiff

phispy

Prediction of prophages from bacterial genomes

pileup2base

Parse samtools pileup file to get how many bases and what kind of bases are called

ppanggolin

Build a partitioned pangenome graph from genomes

promotech

Machine-learning-based general bacterial promoter prediction tool.

pyvenn

Python module for plotting Venn diagrams of 2..6 sets

qpcr_lod_calc

LoD calculator

queryorthodb

This repository contains bash scripts to run BUSCO and a python script to query the OrthoDB api

rna-seq_length_bias

rna-seq_tccomp

Comparison of RNA-seq time course differential expression analysis tools

samsa2

SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customizable reference databases.

sclvm

scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources of variation.

seqcluster

small RNA analysis from NGS data

sgidspace

shovill

Faster SPAdes assembly of Illumina reads

super-focus

A tool for agile functional analysis of shotgun metagenomic data

suppa

SUPPA2: Fast quantification of differential splicing

transcriptome_assembly_scripts

Repository contains example scripts for transcriptome assembly

upsetplot

Draw UpSet plots with Matplotlib

vibrant

Virus Identification By iteRative ANnoTation

wf-clone-validation