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License: MIT License
Assessing and Improving the quality of metagenomic assemblies
License: MIT License
Hi, I am trying to use your software but there is an error on Step: Feature extraction:
Traceback (most recent call last):
File "/home/comp/dylan1021/anaconda3/envs/metamic/lib/python3.7/multiprocessing/process.py", line 297, in _bootstrap
self.run()
File "/home/comp/dylan1021/anaconda3/envs/metamic/lib/python3.7/multiprocessing/process.py", line 99, in run
self._target(*self._args, **self._kwargs)
File "/home/comp/dylan1021/anaconda3/envs/metamic/lib/python3.7/site-packages/metaMIC-0.0.0-py3.7.egg/metaMIC/extract.py", line 483, in pileupfile_parse
match_detail = record[4]
IndexError: list index out of range
And I check the pile up file and I find out that it is because there is an NULL value in the line like this:
k99_62675 17 A 1 , G
k99_62675 18 T 0
k99_62675 19 G 1 , G
I have followed all the steps you mentioned in the tutorial, could you please tell me how to solve this problem?
Thanks & regards
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