sequana / demultiplex Goto Github PK
View Code? Open in Web Editor NEWSequana demultiplexing pipeline
License: BSD 3-Clause "New" or "Revised" License
Sequana demultiplexing pipeline
License: BSD 3-Clause "New" or "Revised" License
Section input-directory not required. Possible regression from 1.4.1 due to click implementation.
After run the command, I tried to run sh script file in below.
sh demultiplex.sh
and I got the error .
Error in rule bcl2fastq:
Error in rule rulegraph:
jobid: 2
jobid: 6
output: Stats/Stats.json
output: .sequana/rulegraph.svg
RuleException:
HTTPError in line 154 of /bio/0107/test/210720_A00930_0202_BHF7GWDSX2/demultiplex.rules:
HTTP Error 404: Not Found
File "/bio/0107/test/210720_A00930_0202_BHF7GWDSX2/demultiplex.rules", line 154, in __rule_rulegraph
File "/root/mambaforge/envs/snakemake/lib/python3.9/urllib/request.py", line 214, in urlopen
File "/root/mambaforge/envs/snakemake/lib/python3.9/urllib/request.py", line 523, in open
File "/root/mambaforge/envs/snakemake/lib/python3.9/urllib/request.py", line 632, in http_response
File "/root/mambaforge/envs/snakemake/lib/python3.9/urllib/request.py", line 561, in error
File "/root/mambaforge/envs/snakemake/lib/python3.9/urllib/request.py", line 494, in _call_chain
File "/root/mambaforge/envs/snakemake/lib/python3.9/urllib/request.py", line 641, in http_error_default
File "/root/mambaforge/envs/snakemake/lib/python3.9/concurrent/futures/thread.py", line 52, in run
RuleException:
HTTPError in line 119 of /bio/0107/test/210720_A00930_0202_BHF7GWDSX2/demultiplex.rules:
HTTP Error 404: Not Found
File "/bio/0107/test/210720_A00930_0202_BHF7GWDSX2/demultiplex.rules", line 119, in __rule_bcl2fastq
File "/root/mambaforge/envs/snakemake/lib/python3.9/urllib/request.py", line 214, in urlopen
File "/root/mambaforge/envs/snakemake/lib/python3.9/urllib/request.py", line 523, in open
File "/root/mambaforge/envs/snakemake/lib/python3.9/urllib/request.py", line 632, in http_response
File "/root/mambaforge/envs/snakemake/lib/python3.9/urllib/request.py", line 561, in error
File "/root/mambaforge/envs/snakemake/lib/python3.9/urllib/request.py", line 494, in _call_chain
File "/root/mambaforge/envs/snakemake/lib/python3.9/urllib/request.py", line 641, in http_error_default
File "/root/mambaforge/envs/snakemake/lib/python3.9/concurrent/futures/thread.py", line 52, in run
so, I downloaded the sequana-wrappers git on local.
https://github.com/sequana/sequana-wrappers
and modify the sh script (vi demultiplex.sh)
add an option (--wrapper-prefix git+file://local_path_sequana-wrappers)
Could you tell me some information about this ?
Thank you in advance!
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.