Name: Shaghayegh Soudi (PhD, MSc)
Type: User
Company: Stanford Radiation Oncology
Bio: Research Scientist-Computational Oncology.
I am interested in understanding genetic/non-genetic
mechanisms of cancer evolution and therapy resistance
Twitter: ShaghayeghSoudi
Location: Stanford
Shaghayegh Soudi (PhD, MSc)'s Projects
scATAC-seq data analysis tools and papers
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
Contains scripts to generate inputs, process outputs and visualize the results
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
This repository contains scripts that do vcf file post filtering and converting vcfs into genotype table and do furthering genotype tables filtering such as MAF