Comments (2)
beardymcjohnface
commented on July 23, 2024
Hi Alan,
Sorry for the late reply, I just got back from leave. Have you had any success troubleshooting this issue? If this is the only error you are getting then I would guess that something has gone wrong with conda env. There are a few google hits for this error, nothing specific to flye but looks like it crops up with corrupted virtual environments etc. I would try manually installing flye into a new env and checking if it runs.
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alanorth
commented on July 23, 2024
Thank you, @shandley. The user is re-running the job and it hasn't gotten to the flye step yet. Will keep you posted. We have to keep fixing the envs every so often (based on our other issues #76 #77).
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Related Issues (20)
- 98, 99% Failure Issue HOT 1
- fastp not building HOT 8
- mmseqs: command not found HOT 7
- Illumina_NextSeq_Run dies immediately HOT 2
- Check for the presence of an environment variable for location of databases HOT 1
- readthedocs viral ecology R tutorial error fix HOT 1
- assembly Contigs in results folder HOT 1
- Enhancement: add whitelist to pre-processing HOT 2
- I want to create a web app for hecatomb. HOT 1
- HPC database installation problems HOT 31
- HPC Execution problem when changing to V.1.1.0 HOT 4
- Skip host removal HOT 1
- Solving OSerror Issues in a WSL Environment during the megahit step. HOT 2
- Can Hecatomb be used for searching not only viruses but also bacteria, fungi, and mycoplasma? HOT 1
- bigtable.tsv column question HOT 1
- Filtering out host (human) genome beforehand? HOT 3
- No rule to produce assembly HOT 5
- add-host is failing on mask_host HOT 3
- out-of-memory error during population_assembly.flye, STAGE: repeat HOT 2
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