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3dbarplot

A 3D barplot script for R. Can encode variables using both height and depth of columns.

advanced-shiny

Shiny tips & tricks for improving your apps and solving common problems

amp_phase1_ra

:ear_of_rice: Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.

autoencoder

Basic autoencoder implementation with Keras.

autoencoders

Implementation of several different types of autoencoders

bien3320

bingleseq

BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses

ccdph-shiny-home-page

Directory for all of Cook County Department of Public Health Communicable Disease Unit's Shiny apps

code

about code

cpplot

Visualize the results of cell-cell communication analysis

deeplearningfornlpinpytorch

An IPython Notebook tutorial on deep learning for natural language processing, including structure prediction.

demostar

dragonstar2019

first

firstgithub

gtfhandling

python scripts to handle gene annotation GTF files

hgsoc_tme_heterogeneity

Analysis of treatment naive and neo-adjuvant chemotherapy treated high-grade serous ovarian cancer samples

image-clf-keras-shiny

Source code for the app :butterfly:

jaekel_agirre_et_al_2018

Code and data from the manuscript (Jäkel and Agirre et. al. 2019, Altered human oligodendrocyte heterogeneity in multiple sclerosis.)

lab_2021

Repository for all the labs for Spring 2021

likert

Package to analyze likert based items.

machlearn

Machine learning dashboard created with R/shiny

mailr

A utility to send emails from the R programming environment

mixcr

MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.

mixomics

Development repository for the Bioconductor package 'mixOmics '

multilygan

a new multi-classification machine learning pipeline MultiLyGAN to identity seven types of lysine modified sites

mutracer

nrldashboard

quickhull

Quickhull algorithm implementation in Python 3

r-shinyapp-tutorial

radar

An interactive tool for rapid analysis of diagnostic and antimicrobial pattern in R using Shiny